Monday, December 29, 2014

Cystic Fibrosis Mutations: Class II

Class II  Mutations:

An example of a Cystic Fibrosis class II mutation is Delta F508

This class contains a defective CFTR protein processing and trafficking. The post translational processing and transport reduce the number of CFTR proteins that are delivered to the cell surface.The protein is unable to fold correctly.

Lung function range in patients with Delta F508:


This chart was created with data from CFTR2.org and CFF.org

Friday, December 12, 2014

Cystic Fibrosis Mutations: Class I

Class I Mutations:

An example of a Cystic Fibrosis nonsense-stop mutation is G542X.

This class includes premature termination codons (PTCs)- a point mutation in the DNA sequence that results in a premature stop. Missing information is the cause of the premature stop and as a result, the protein product is usually nonfunctional and incomplete. The missing genetic information stops cells from making complete CFTR proteins.

Lung function range in patients with G542X:

This chart was created with data from CFTR2.org and CFF.org

Monday, December 8, 2014

Normal CFTR protein channels


Normal Cystic Fibrosis Transmembrane Conductance Regulators (CFTR) transport chloride and bicarbonate ions through the cell membrane of epithelial cells. This helps to regulate fluid and electrolyte balance in the epithelial tissues throughout the body. Epithelial tissue is found in the lungs, sinuses, pancreas, intestines, reproductive system, and sweat glands. When ion flow fails, the ionic concentration of the secretions is modified. The epithelia no longer maintains surface hydration and can cause the duct lumens to obstruct. 

CFTR activity is determined by the quantity of CFTR channels at the cell surface, the amount of time each channel is open (gating), and the amount of ions conducted in a given time in each channel (conductance). CFTR quantity is determined by gene transcription, proper splicing, and mRNA translation, processing and trafficking and the maturation of the CFTR protein and the delivery of it to the cell's surface, and surface stability- the amount of time a CFTR channel is at the surface before being removed and recycled.

According to in vitro experimentation (Bompadre SG, Sohma Y, Li M, Hwang TC. G551D and G1349D), CFTR protein channels have an open probability of ~40%, meaning they are open approximately 40% of the time.

Wednesday, December 3, 2014

Cystic Fibrosis Mutations

The genetic mutation that causes Cystic Fibrosis was discovered in 1989. Mutations on a single gene- the Cystic Fibrosis Transmembrane Regulator (hereafter referred to as CFTR) causes the most common, fatal genetic disease.

Since the discovery of the CFTR gene, researchers have identified over 1,800 mutations. These mutations are grouped into different classes and types dependent upon how the mutation affects the key protein produced by the CF gene.

The CFTR gene is located on the 7th chromosome and is composed of 250,000 DNA nucleotides. In healthy people (those with normally functioning CFTR genes), the CFTR is located on the surface of the cells that line the lungs and other organs. The protein made by the CFTR is a chloride channel. Chloride flows in and out of the cells through a "doorway" and water flows behind in. The water keeps the mucus this and moves it out as well.

What is a nucleotide?
A structural components of DNA and RNA. A nucleotide consists of one of the following chemicals: adenine, thymine, guanine, or cytosine, plus a molecule of sugar and one of phosphoric acid.

What does the CFTR gene do?
The CFTR protein functions as a channel for the movement of chloride ions in and out of our cells. This is important for the salt and water balance on epithelial surfaces (the tissue that lines the cavities and surfaces throughout the body). A balanced level is highly important for the lungs and pancreas, however, due to mutations of the CFTR, these organs are negatively affected. The mutations affect the composition of the mucus layer (airway surface liquid, ASL- a liquid and mucus gel layer that contains salt) that lines the epithelial surfaces in the lungs and pancreas. A disruption in of ion transport affects the salt concentration in the sweat. This is why sweat tests are used as a diagnostic measure.

Although a diagnosis of Cystic Fibrosis is usually straightforward, genetic testing is preferred. Genotype is not the final arbiter of a clinical diagnosis of CF. Diagnosis is primarily based on: sweat testing, nasal potential difference, and genetic analysis. None of these features are sufficient on their own to make a diagnosis of CF.

In order to Cystic Fibrosis, a person must have inherited two defective genes from both parents. The mutations can be the same (homogenous) or different (heterogenous). For example, a person could have the 621+1g>t mutation and the F508del mutation. The heterogeneity of CFTR mutations in various populations makes mutation detection rates extremely challenging. A small number of CF patients have only one or no CFTR mutations identified.

Why do mutations matter?
Not every case of Cystic Fibrosis is the same. A CF Patient's mutation determines what happens on a cellular level.

Identification of the underlying mechanisms that cause CF allows for researchers to better understand how certain medications can help specific CF patients. CFTR targeted therapies could treat the issues on a cellular level, which would address the cause of CF as opposed to the symptoms of CF.

Tuesday, September 16, 2014

The Role of Antioxidants


The Cystic Fibrosis Foundation has funded research studies on antioxidant therapies in patients with CF.

Antioxidants counteract damaging effects on the body's cells caused by free radicals. Free radicals can cause a domino effect of damage on the body. By maintaining a higher number of antioxidants, the damage can be slowed down by neutralizing and removing free radicals from the bloodstream.

Although CF has negative implications on the digestion system, it is still pertinent to one's health to intake a well balanced diet high in nutritional value. The development of a new vitamin by Yasoo Health (the producers of Aquadek) is underway and will contain vitamins and micronutrients that are not in the currently recommended CF vitamins.

In the meantime, you can eat the following fruits, veggies, and nuts to up your daily dosage of antioxidants. Keep in mind that although they are good for you, too much of a good thing can be bad! If you decide to make any drastic changes in your diet or vitamin regimen, consult your doctor and dietician beforehand!

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Monday, September 15, 2014

Bronchoscopy



A bronchoscopy is a procedure in which a patient's airways are examined. The larynx (voice box), trachea (wind pipe) and bronchii (smaller wind pipes within the lungs) are all observed as the patient breathes in and out. This technique is done in an exam room at a hospital or specialized clinic. It usually lasts about 30 minutes, but including prep time and recovery, it can take approximately 4 hours. Eating or drinking before the procedure is not allowed. 


Medicine is usually administered via IV or by mouth to make you relaxed and sleepy.The anesthesiologist may administer a numbing medicine (lidocaine) through the bronchoscope to numb the larynx, trachea and bronchii.

The procedure is recorded with a flexible, fiber optic bronchoscope, which has a light and small camera. A bronchoscope is a soft tube no larger than 1/4'' in diameter. It can be passed through the nose or throat.


During the procedure, your doctor may take a sample of lung fluid or tissue for further testing. The following methods can be used to obtain a lung tissue sample:
  • Bronchoalveolar lavage- A small amount of saline solution (salt water) is administered through the bronchoscope and into part of your lung. The salt water is then suctioned out. The fluid picks up cells and bacteria from the airway, which your will be reviewed.
  • Transbronchial needle aspiration- A needle is inserted into the bronchoscope and removes cells from the lymph nodes in your lungs. These nodes are small, bean-shaped masses. They trap bacteria and cancer cells and help fight infections.
  • Transbronchial lung biopsy- Forceps are entered into the bronchoscope and a small tissue sample from inside the lung is taken.
During the procedure, oxygen levels will be observed to ensure enough air is getting to the lungs. If the levels decrease, oxygen will be given.

Side effects of the procedure are generally minimal. They may include soreness of the throat, fever, hoarseness, cough or wheezing. To prevent/minimize the side effects, anti-inflammatories may be prescribed by the performing physician. 

Tips:

  • Inform the physician if there have been any changes in the patient's condition- fever, worsening cough,hemoptysis, etc.
  • Bring the a detailed list of medications including dosages, list of allergies

Thursday, August 28, 2014

Shop and Support

I use Amazon.com for a majority of my purchases. From bakeware to back to school, I'm frequently comparing prices and checking out.

Now you can shop and support the CF Foundation. Go to smile.amazon.com instead of amazon.com. When you enter through the new gateway, you will be prompted to select an organization that .5% of your purchase will go to. You can also search "Cystic Fibrosis Foundation" and select it that way. The Amazon Smile page is the exact same site- same prices, selection, etc. The only exception is that eligible products are marked on the details page.













The Cystic Fibrosis Foundation doesn't receive government funding, so this is an excellent way to increase funds and awareness.


More info here. 

Shop on!

Rebecca